title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Oligodendrocitos_F {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/MA_HC_Oligodendrocitos_F.RData")
```ENSG00000020922
Statistics of ENSG00000020922 meta-analisys
kable(sig.genes.df['ENSG00000020922',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000020922 | MRE11 | 0.1421877 | 0.2065693 | 0.2709509 | 0 | 1.107389 | 0.2926503 | 0.0328483 | 0.0002233 | 9.697466 | 1.107389 | 2e-07 | 2.3e-06 | 6.643835 | 2 | 2 | GSE163577,syn52293442_hc | 0.8438447 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000020922_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000020922_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000020922_INFLUENCE.png")
ENSG00000071991
Statistics of ENSG00000071991 meta-analisys
kable(sig.genes.df['ENSG00000071991',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000071991 | CDH19 | 0.3414889 | 0.437115 | 0.5327411 | 0 | 1.047378 | 0.5923316 | 0.0487897 | 0 | 0 | 1 | 0 | 0 | 15.2011 | 3 | 3 | non | 0.9832964 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000071991_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000071991_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000071991_INFLUENCE.png")
ENSG00000105695
Statistics of ENSG00000105695 meta-analisys
kable(sig.genes.df['ENSG00000105695',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000105695 | MAG | 0.3046129 | 0.433996 | 0.563379 | 0 | 3.192072 | 0.2026984 | 0.066013 | 0.0049323 | 37.34478 | 1.596036 | 0 | 4e-07 | 7.437183 | 3 | 3 | Study43,GSE163577,syn52293442_hc | 0.5681001 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000105695_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000105695_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000105695_INFLUENCE.png")
ENSG00000117000
Statistics of ENSG00000117000 meta-analisys
kable(sig.genes.df['ENSG00000117000',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000117000 | RLF | 0.2366396 | 0.3238552 | 0.4110709 | 0 | 0.4554772 | 0.7963324 | 0.0444986 | 0 | 0 | 1 | 0 | 0 | 9.454357 | 3 | 3 | non | 0.7784962 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000117000_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000117000_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000117000_INFLUENCE.png")
ENSG00000123684
Statistics of ENSG00000123684 meta-analisys
kable(sig.genes.df['ENSG00000123684',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000123684 | LPGAT1 | 0.3037176 | 0.4018484 | 0.4999791 | 0 | 0.5186513 | 0.7715717 | 0.0500676 | 0 | 0 | 1 | 0 | 0 | 11.86811 | 3 | 3 | syn52293442_hc | 0.63095 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000123684_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000123684_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000123684_INFLUENCE.png")
ENSG00000124406
Statistics of ENSG00000124406 meta-analisys
kable(sig.genes.df['ENSG00000124406',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000124406 | ATP8A1 | -0.2703696 | -0.222107 | -0.1738443 | 0 | 1.504139 | 0.4713899 | 0.0246243 | 0 | 0 | 1 | 0 | 0 | 15.37393 | 3 | 3 | GSE163577,syn52293442_hc | 0.272951 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000124406_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000124406_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000124406_INFLUENCE.png")
ENSG00000139083
Statistics of ENSG00000139083 meta-analisys
kable(sig.genes.df['ENSG00000139083',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139083 | ETV6 | 0.1648001 | 0.220667 | 0.2765338 | 0 | 1.283383 | 0.5264014 | 0.028504 | 0 | 0 | 1 | 0 | 0 | 10.92019 | 3 | 3 | syn52293442_hc | 0.6177592 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000139083_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000139083_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000139083_INFLUENCE.png")
ENSG00000141198
Statistics of ENSG00000141198 meta-analisys
kable(sig.genes.df['ENSG00000141198',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000141198 | TOM1L1 | 0.1157265 | 0.1512815 | 0.1868366 | 0 | 1.463003 | 0.4811859 | 0.0181407 | 0 | 0 | 1 | 0 | 0 | 12.90058 | 3 | 3 | syn52293442_hc | 0.7412442 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000141198_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000141198_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000141198_INFLUENCE.png")
ENSG00000144455
Statistics of ENSG00000144455 meta-analisys
kable(sig.genes.df['ENSG00000144455',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000144455 | SUMF1 | 0.337572 | 0.4747659 | 0.6119598 | 0 | 0.9226412 | 0.6304505 | 0.0699982 | 0 | 0 | 1 | 0 | 1e-07 | 8.002725 | 3 | 3 | non | 0.8084346 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000144455_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000144455_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000144455_INFLUENCE.png")
ENSG00000154380
Statistics of ENSG00000154380 meta-analisys
kable(sig.genes.df['ENSG00000154380',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000154380 | ENAH | 0.3430628 | 0.462016 | 0.5809692 | 0 | 1.487302 | 0.475375 | 0.0606915 | 0 | 0 | 1 | 0 | 0 | 10.52053 | 3 | 3 | GSE163577 | 0.9221039 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000154380_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000154380_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000154380_INFLUENCE.png")
ENSG00000168785
Statistics of ENSG00000168785 meta-analisys
kable(sig.genes.df['ENSG00000168785',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000168785 | TSPAN5 | -0.8930662 | -0.6805169 | -0.4679675 | 0 | 2.801931 | 0.246359 | 0.1084456 | 0.0104846 | 28.62065 | 1.400965 | 2e-07 | 2.4e-06 | 6.628718 | 3 | 3 | Study43,GSE163577 | 0.7044742 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000168785_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000168785_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000168785_INFLUENCE.png")
ENSG00000180776
Statistics of ENSG00000180776 meta-analisys
kable(sig.genes.df['ENSG00000180776',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000180776 | ZDHHC20 | -1.637141 | -1.273505 | -0.9098687 | 0 | 13.48032 | 0.0011825 | 0.185532 | 0.0860898 | 85.16355 | 6.740158 | 0 | 1e-07 | 8.221262 | 3 | 3 | Study43,GSE163577 | 0.947361 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000180776_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000180776_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000180776_INFLUENCE.png")
ENSG00000184384
Statistics of ENSG00000184384 meta-analisys
kable(sig.genes.df['ENSG00000184384',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184384 | MAML2 | 0.9701809 | 1.085939 | 1.201698 | 0 | 1.076781 | 0.5836871 | 0.0590615 | 0 | 0 | 1 | 0 | 0 | 70.94575 | 3 | 3 | syn52293442_hc | 0.8654401 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000184384_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000184384_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000184384_INFLUENCE.png")
ENSG00000196628
Statistics of ENSG00000196628 meta-analisys
kable(sig.genes.df['ENSG00000196628',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000196628 | TCF4 | -0.4870051 | -0.4006879 | -0.3143707 | 0 | 1.352945 | 0.5084073 | 0.0440402 | 0 | 0 | 1 | 0 | 0 | 15.60683 | 3 | 3 | syn52293442_hc | 0.3814093 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000196628_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000196628_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000196628_INFLUENCE.png")
ENSG00000204227
Statistics of ENSG00000204227 meta-analisys
kable(sig.genes.df['ENSG00000204227',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000204227 | RING1 | -0.4519 | -0.3522674 | -0.2526348 | 0 | 0.580569 | 0.4460894 | 0.0508339 | 0 | 0 | 1 | 0 | 0 | 8.392079 | 2 | 2 | syn52293442_hc | 0.8226024 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000204227_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000204227_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000204227_INFLUENCE.png")
ENSG00000224101
Statistics of ENSG00000224101 meta-analisys
kable(sig.genes.df['ENSG00000224101',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000224101 | ELMO1-AS1 | 0.2463219 | 0.308099 | 0.3698761 | 0 | 0.7106276 | 0.3992355 | 0.0315195 | 0 | 0 | 1 | 0 | 0 | 18.31342 | 2 | 2 | GSE163577,syn52293442_hc | 0.8878037 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000224101_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000224101_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000224101_INFLUENCE.png")
ENSG00000228696
Statistics of ENSG00000228696 meta-analisys
kable(sig.genes.df['ENSG00000228696',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000228696 | ARL17B | -1.385862 | -1.260463 | -1.135063 | 0 | 0.8759556 | 0.3493118 | 0.0639803 | 0 | 0 | 1 | 0 | 0 | 81.54377 | 2 | 2 | GSE163577,syn52293442_hc | 0.9652295 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000228696_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000228696_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000228696_INFLUENCE.png")
ENSG00000231171
Statistics of ENSG00000231171 meta-analisys
kable(sig.genes.df['ENSG00000231171',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000231171 | LINC01098 | 0.1768035 | 0.2312836 | 0.2857638 | 0 | 0.0581802 | 0.8093957 | 0.0277965 | 0 | 0 | 1 | 0 | 0 | 12.88293 | 2 | 2 | non | 0.8079122 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000231171_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000231171_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000231171_INFLUENCE.png")
ENSG00000243716
Statistics of ENSG00000243716 meta-analisys
kable(sig.genes.df['ENSG00000243716',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000243716 | NPIPB5 | 0.1766614 | 0.2508964 | 0.3251313 | 0 | 0.8854319 | 0.3467182 | 0.0378757 | 0 | 0 | 1 | 0 | 3e-07 | 7.558255 | 2 | 2 | GSE163577 | 0.780361 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000243716_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000243716_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000243716_INFLUENCE.png")
ENSG00000250634
Statistics of ENSG00000250634 meta-analisys
kable(sig.genes.df['ENSG00000250634',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000250634 | LINC01182 | -0.4193494 | -0.3499556 | -0.2805618 | 0 | 0.0668363 | 0.7960001 | 0.0354056 | 0 | 0 | 1 | 0 | 0 | 18.65983 | 2 | 2 | syn52293442_hc | 0.5643918 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000250634_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000250634_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Oligodendrocitos/F/plots/ENSG00000250634_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:50:39 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2